Swiss Institute of Bioinformatics

Life Science Directory

(formerly known as Amos' WWW links page)

Notes:

1) The URL for this page is http://www.expasy.org/links.html
, but remember that we reserve the right to choose the links we want to include !

3) Links to protein sequence, 3D structure and 2D-gel analytical tools are provided on ExPASy's Proteomics tools page.

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Protein db | 3D structure db | 2D-PAGE & MS db | DNA/RNA db | Carbohydrates db | Species specific db | Human mutation db | Genes/proteins specific db | PTM db | Phylogenetics db | Gene expression db | Patents | References | Dict., protocols & nomenclat. | Biol. soft. & db catalogs | Gateways | Biol. journals & publishers | Biol. societies | Biocomputing servers | Biotech. companies | Bioinformatics companies | Misc. medical ref. sites | Misc. scientific ref. sites

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Protein related databases
UniProt - the universal protein resource (including UniProtKB -Swiss-Prot and TrEMBL-, UniRef, UniParc) Around UniProtKB - links to related databases and portals HAMAP - Portal to microbial UniProtKB/Swiss-Prot entries SwissVar - Portal to human diseases and variant information in UniProtKB/Swiss-Prot UniPathway - Metabolic pathways database ViralZone - Portal to viral UniProtKB/Swiss-Prot entries HPI - Human Proteomics Initiative PPAP - Plant Proteome Annotation Project Tox-Prot - Toxin Annotation Project NCBI protein resources InterPro - Integrated Resources of Proteins Domains and Functional Sites PROSITE - Database of protein families and domains BLOCKS - BLOCKS db Gene3D - Structural and Functional Annotation of Protein Families Panther - Functional classification system Pfam - Protein families db (HMM derived) [Mirrors at JFRC (USA), CCBB (South Korea) Institute, UK, Karolinska Institutet (Sweden)] PIRSF - Protein classification system PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) SBASE - SBASE domain db SMART - Simple Modular Architecture Research Tool SUPERFAMILY - Library of profile HMMs representing all proteins of known structure STRING - Search Tool for the Retrieval of Interacting Genes/Proteins TIGRFAMs - TIGR protein families db BIND - Biomolecular Interaction Network Database DIP - Database of Interacting Proteins MINT - Molecular INTeraction database HPRD - Human Protein Reference Database IntAct BioGRID - General Repository for Interaction Dataset PPI - JCB Protein-Protein Interaction Website PMD - Protein Mutant db
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Protein 3D structure related databases
PDB - Protein Data Bank PDBTM - Protein Data Bank of Transmembrane Proteins BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [ Mirrors] HCA - Hydrophobic Cluster Database Molecules To Go - Molecules To Go (formerly known as Molecules R Us), browser for PDB BMM Domain Fishing - Biomolecular Modelling Laboratory (ICRF) protein domain fishing Relibase - Receptor/ligand complexes db [Mirror in USA] CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD)) HSSP - Homology-derived secondary structure of proteins db MutaProt - Comparison of PDB files which differ by point mutations DisProt - Database of Protein Disorder SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules BioImage - Biological image db (contains imaging data on macromolecules)
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Proteomics databases and links
Gel-based data
MIAPEGelDB - A public repository for MIAPE Gel electrophoresis documents WORLD-2DPAGE List - Links to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services World-2DPAGE Repository - A public standards-compliant repository for gel-based proteomics data published in the literature The World-2DPAGE Constellation - Promote and publish gel-based proteomics data through the ExPASy server Proteomics Links page of the Swiss Proteomics Society
Mass spectrometry data
GPMdb - Global Proteome Machine Database OPD - Open Proteomics Database PeptideAtlas - peptides identified in tandem mass spectrometry proteomics experiments PRIDE - PRoteomics IDEntifications database Tranche - Peer-to-peer distributed file system
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Nucleotide and related databases
EMBL - EMBL Nucleotide sequence db (EBI) Genbank - GenBank Nucleotide Sequence db (NCBI) DDBJ - DNA Data Bank of Japan dbEST - dbEST (Expressed Sequence Tags) db (NCBI) dbSTS - dbSTS (Sequence Tagged Sites) db (NCBI) Ensembl - Genome database for vertebrates and other eukaryotic species UCSC Genome Browser AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA sequences db Codon Usage Db EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] RDP - Ribosomal db Project PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db smiRNAdb - Information about mammalian small RNAs ssu rRNA - Small ribosomal subunit at the European ribosomal RNA database lsu rRNA - Large ribosomal subunit at the European ribosomal RNA database 5S rRNA - 5S ribosomal RNA db greengenes - 16S rRNA gene database and workbench tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of Bayreuth RNA editing - RNA editing site RNAmod db - RNA modification db MPDB - Molecular probe db VectorDB - Vector sequence db
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Carbohydrates resources
FCCA - Forum Carbohydrates Coming of Age GlycoSuiteDB - Db of glycan structures Monosacharide browser - Space filling Fischer projection for monosaccharides Thorkild's lectin page - Gateway to lectins
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Species specific databases:
Human
OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneTests - Medical genetics knowledge base GeneCards - Db integrating information on human genes GeneLoc - Integrated map of the human genome (ex- UDB) Ensembl Human genome browser TIGR HGI - TIGR Human Gene Index Hs UniGene - Human transcripts in GenBank (EST clusters) STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs) Allgenes.org - Human predicted gene index/catalog GenLink - Human genetics resource GeneLynx - Portal to the human genome HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...) CGAP - Cancer Genome Anatomy Project MGC - Mammalian Gene Collection SCDb - Stem cell db Homophila - Human Disease to Drosophila gene db Human Protein Atlas - Displays the expression and localization of proteins in a large variety of normal human tissues and cancer cells Progenetix CGH database - Molecular Cytogenetics in Leukemia and Cancer Chr1 at Rutgers - Human chromosome 1 at Rutgers Chr1 at Sanger - Sanger Center chromosome 1 project Chr1 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr2 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr3 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr4 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr5 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr6 at Sanger - Sanger Center chromosome 6 project Chr6 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr7 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr8 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr9 at Sanger - Sanger Center chromosome 1 project Chr9 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr10 at Sanger - Sanger Center chromosome 10 project Chr10 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr11 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr12 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr13 at Sanger - Sanger Center chromosome 13 project Chr13 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr14 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr15 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr16 TIGR - Human chromosome 16 db at TIGR Chr16 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr17 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr18 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr19 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr20 at Sanger - Sanger Center chromosome 20 project Chr20 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr21 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22 Chr22 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM ChrX at Sanger - Sanger Center chromosome 1 project ChrX UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM ChrY UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM H-InvDB Database - Human gene db, with cDNA clones available from six high throughput cDNA sequencing projects Human Chromosome1 Launchpad Human Chromosome2 Launchpad Human Chromosome3 Launchpad Human Chromosome4 Launchpad Human Chromosome5 Launchpad Human Chromosome6 Launchpad Human Chromosome7 Launchpad Human Chromosome8 Launchpad Human Chromosome9 Launchpad Human Chromosome10 Launchpad Human Chromosome11 Launchpad Human Chromosome12 Launchpad Human Chromosome13 Launchpad Human Chromosome14 Launchpad Human Chromosome15 Launchpad Human Chromosome16 Launchpad Human Chromosome17 Launchpad Human Chromosome18 Launchpad Human Chromosome19 Launchpad Human Chromosome20 Launchpad Human Chromosome21 Launchpad Human Chromosome22 Launchpad Human ChromosomeX Launchpad Human ChromosomeY Launchpad
Vertebrates
OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes MGD) Ensembl Mouse genome browser DFCI MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST clusters) MGC - Mammalian Gene Collection Mouse gene knockouts db RGD - Rat genome db RatMAP - Rat genome db DFCI RGI - TIGR Rat Gene Index Rn Unigene - Rat transcripts in GenBank (EST clusters) BOVMAP - Bovine genome db (in France) NHGRI Dog Genome Project ArkDB - Cat, Chicken, Cow, Deer, Horse, Pig, Quail, Sheep, Turkey genome databases FishBase - Global information system on fishes Fugu genome project Fugu - HGMP Resource Centre Fugu Project (Fugu rubripes) Ensembl Fugu genome browser MEPD - Medaka Expression Pattern Database ArkDB - Sea Bass, Salmon genome databases ZFIN - Zebrafish Information Network Ensembl Zebrafish genome browser
Mitochondrion and chloroplast
GOBASE - Organelle Genome Database MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear gen C.caldarium - Cyanidium caldarium strain RK1 chloroplast genome
Insects
Drosophila UniProtKB/Swiss-Prot entries, gene names and cross-references to FlyBase FlyBase - Drosophila genetic and molecular db BDGP - Berkeley Drosophila Genome Project FlyView - Drosophila image db Homophila - Human Disease to Drosophila gene db Mosquito Genomics AnoDB - Anopheles gambiae db Ensembl Mosquito genome browser
Invertebrates
WormBase - C.elegans db [Mirror at Sanger] C.elegans WWW server - at University of Texas Southwestern C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins NEXTDB - The Nematode Expression Pattern DataBase C.elegans UniProtKB/Swiss-Prot entries, gene names and cross-references to WormPep WormPep - C.elegans proteins db WorfDB - C. elegans ORFeome cloning project Dictyostelium discoideum UniProtKB/Swiss-Prot entries, gene names and cross-references to DictyBase DictyBase - Dictyostelium discoideum db DictyDb - Dictyostelium discoideum db Dictyostelium Genome Sequencing project at BCM Cone shells Web site Parasite genomes db and resources PlasmoDB - P.falciparum genome db Malaria - WHO - Malaria db (from WHO) P.falciparum Sanger - P.falciparum genome project at Sanger PFDB - Plasmodium falciparum Genome db P.falciparum - Plasmodium falciparum Gene Sequence Tag project Malaria parasite metabolic pathways GiardiaDB LGN - Leishmania major Genome Project ToxoDB - Toxoplasma gondii genome project Trypanosoma brucei genome project Trypanosoma cruzi genome project kDNA - Kinetoplast Minicircle Sequence db
Plants
NAL - AGIS - Access to many plant genome databases at the National Agricultural Library Mendel - Plant gene nomenclature database from CPGN FLAGdb++ - Integrative database around plant genomes Arabidopsis UniProtKB/Swiss-Prot entries, gene names and WWW servers TAIR - The Arabidopsis Information Resource MATDB - MIPS Arabidopsis thaliana db TIGR At - TIGR Arabidopsis thaliana db AMPL - Arabidopsis Membrane Protein Library Arabidopsis at PlaCe - Site with info on P450, glucosyltransferases, etc. Gramene - A comparative mapping resource for grains Oryza sativa UniProtKB/Swiss-Prot entries, gene names and WWW servers RGP - Rice Genome Research Program Oryzabase - Japanese rice genome db Rice genome project at Wisconsin Rice-research.org - Monsanto rice genome site TIGR OsGI - TIGR Rice Genome project BeanGenes - Beans genome db Brassica Genome Gateway ChlamyDB - Chlamydomonas reinhardtii genome db CoffeeDNA - Coffee genomics web site CottonDB - Cotton genome db MaizeDb - Maize genome db Pisum sativum (pea) web site (in russian) TIGR Potato - TIGR Potato Functional Genomics project Snapdragon (A.majus) web site DragonDB - Snapdragon Database SorghumDB - Sorghum genome db DFCI GmGI - DFCI Soybean Gene Index SoyBase - Soybean genome db SoyBase metabolic db - Metabolic subset of the soybean genome db DFCI LeGI - DFCI Tomato Gene Index Dendrome - Forest trees genome db
Fungi
FGSC - Fungal Genetics Stock Center Genolevures - Genomic Exploration of the Hemiascomycete Yeasts FGI - Fungal genome initiative at the Broad Institute Fungal genome databases at MIPS Fungal genomes at the Sanger Institute FGR - Fungal Genome Resource Yeast (S. cerevisiae) UniProtKB/Swiss-Prot entries, gene names and cross-references to SGD CYGD - MIPS Comprehensive Yeast Genome db SGD - Saccharomyces genome db Yeast snoRNA - Yeast small nucleolar RNAs db YTPdb - Yeast Transport Protein db YMPL - Yeast Membrane Protein Library YEASTGFP - Yeast GFP Fusion Localization db TRIPLES - TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces YRC - Yeast Resource Center PROPHECY - PROfiling of PHEnotypic Characteristics in Yeast SCMD - Saccharomyces Cerevisiae Morphological db GPofYPF - Global Profiling of Yeast Protein Function Saccharomyces Genomes - Finding functional features in Saccharomyces Genomes by phylogenetic footprinting Yeast Comparative Genomics S.pombe UniProtKB/Swiss-Prot entries, gene names and WWW servers GeneDB S.Pombe - Schizosaccharomyces pombe GeneDB S.pombe genome project PombeNet - Forsburg lab pombe pages AGD - Ashbya genome db Aspergillus nidulans db Aspergillus fumigatus Genome db The Aspergillus web site C. albicans UniProtKB/Swiss-Prot entries, gene names and WWW servers CGD - Candida Genome db C. albicans physical map - Candida albicans server at the Univ. of Minnesota Candida albicans pages - Candida albicans at the NRC/BRI C.albicans genome annotation - Agabian Lab Web db CandidaDB - Candida albicans GenoList browser at Institut Pasteur Cryptococcus neoformans Genome Project Cryptococcus neoformans db - Candida Genome db CunicuList - Encephalitozoon cuniculi Genome db FGDB - Fusarium graminearum Genome db Kluyveromyces lactis annotation db MNCDB - MIPS Neurospora crassa db Neurospora crassa db NGP - Neurospora crassa genome project at New Mexico Neurospora crassa Gene List MUMDB - MIPS Ustilago maydis db PC - Pneumocystis carinii genome project Phycomyces Web site - Resource site for scientists working on Phycomyces
Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature List of complete bacterial proteomes in Swiss-Prot (HAMAP) CBS - CBS Genome Atlas Database CMR - TIGR Comprehensive Microbial Ressource GIB - Genome information broker for Microbial genomes GOLD Genomes On-line Database HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen BPGD - Bacterial polysaccharide gene db Bacterial quorum sensing MicrobeWorld - Educational site on microbes E.coli UniProtKB/Swiss-Prot entries, gene names and cross-references to EcoGene EcoWeb / EcoGene - Very comprehensive E.coli db ECCE - E.coli Cell Envelope Protein Data Collection ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism EchoBASE GenProtEC - E.coli genome and proteome db Colibri - E.coli GenoList browser at Institut Pasteur ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ Regulon DB B.subtilis UniProtKB/Swiss-Prot entries, gene names and WWW servers SubtiList - Bacillus subtilis GenoList browser at Institut Pasteur NRSub - Bacillus subtilis non-redundant db DBTBS - Db of B.subtilis promoters and transcription factors A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project Bordetella species genome projects at Sanger Institute - bronchiseptica strain RB50, parapertussis strain 1822 and pertussis strain Tohama I BbDB - Borrelia burgdorferi B31 genome db at JCVI-CMR Brucella abortus strain 2308 UniProtKB/Swiss-Prot entries, gene names and WWW servers Brucella abortus strain 9-941 UniProtKB/Swiss-Prot entries, gene names and WWW servers Brucella melitensis strain 16M UniProtKB/Swiss-Prot entries, gene names and WWW servers Brucella suis strain 1330 UniProtKB/Swiss-Prot entries, gene names and WWW servers B.aphidicola (subsp. Acyrthosiphon pisum) UniProtKB/Swiss-Prot entries, gene names and WWW servers B.aphidicola (subsp. Schizaphis graminum) UniProtKB/Swiss-Prot entries, gene names and WWW servers C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project C.muridarum - Chlamydia muridarum strain MoPn genome db at JCVI-CMR C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at JCVI-CMR C.pneumoniae J138 - Chlamydia pneumoniae strain J138 genome db at JCVI-CMR Chromobacterium violaceum - Brazilian Genome C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute Coxiella burnetii strain RSA 493 UniProtKB/Swiss-Prot entries, gene names and WWW servers CyanoBase - The Genome Database for Cyanobacteria CyanoList - Synechocystis PCC6803 and Anabaena PCC7120 GenoList browser at Institut Pasteur DrDB - Deinococcus radiodurans strain R1 genome db at JCVI-CMR E.ruminantium - Ehrlichia ruminantium (formerly Cowdria ruminantium) genome project at Sanger Institute H.influenzae UniProtKB/Swiss-Prot entries, gene names and WWW servers HiDB - Haemophilus influenzae genome db at JCVI-CMR H.pylori UniProtKB/Swiss-Prot entries, gene names and WWW servers HpDB - Helicobacter pylori strain 26695 genome db at JCVI-CMR PyloriGene - Helicobacter pylori GenoList browser at Institut Pasteur L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db L.plantarum - Lactobacillus plantarum genome project LegioList - Legionella pneumophila Paris strain and Legionella pneumophila Lens strain GenoList browser at Institut Pasteur ListiList - Listeria monocytogenes and Listeria innocua GenoList browser at Institut Pasteur BoviList - Mycobacterium bovis strain AF2122/97 GenoList browser at Institut Pasteur M.bovis - Mycobacterium bovis strain AF2122/97 genome project at Sanger Institute Leproma - Mycobacterium leprae strain TN genome db M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute TubercuList - Mycobacterium tuberculosis strain H37Rv GenoList browser at Institut Pasteur MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at JCVI-CMR M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute M.tuberculosis structural genomics consortium BuruList - Mycobacterium ulcerans strain Agy99 GenoList browser at Institut Pasteur M.genitalium UniProtKB/Swiss-Prot entries, gene names and WWW servers MgDB - Mycoplasma genitalium genome db at JCVI-CMR M.pneumoniae UniProtKB/Swiss-Prot entries, gene names and WWW servers M.pneumoniae - Mycoplasma pneumoniae genome project MypuList - Mycoplasma pulmonis GenoList browser at Institut Pasteur Mycoplasma synoviae genome db - Brazilian Genome N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at JCVI-CMR N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project N.europaea - Nitrosomonas europaea genome project PhotoList - Photorhabdus luminescens strain TT01 GenoList browser at Institut Pasteur P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome project R.solanacearum - Ralstonia solanacearum genome project Rhizobium pNGR234a UniProtKB/Swiss-Prot entries, gene names and WWW servers RhizoBase - The Genome Database for Rhizobia Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.palustris - Rhodopseudomonas palustris genome project RicBase - Rickettsia conorii strain Malish 7 genome project R.bellii strain RML369-C UniProtKB/Swiss-Prot entries, gene names and WWW servers R.conorii strain Malish 7 UniProtKB/Swiss-Prot entries, gene names and WWW servers R.felis strain URRWXCa12 UniProtKB/Swiss-Prot entries, gene names and WWW servers R.prowazekii UniProtKB/Swiss-Prot entries, gene names and WWW servers R.typhi strain Wilmington UniProtKB/Swiss-Prot entries, gene names and WWW servers S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute S.meliloti - Sinorhizobium meliloti genome project AureoList - Staphylococcus aureus strains N315 and Mu50 GenoList browser at Institut Pasteur S.aureus - Staphylococcus aureus strain NCTC 8325 genome project SagaList - Streptococcus agalactiae strain NEM316 GenoList browser at Institut Pasteur StreptoPneumoList - Streptococcus pneumoniae strains R6 and Tigr4 GenoList browser at Institut Pasteur S.mutans - Streptococcus mutans strain UAB159 genome project S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute S.suis - Streptococcus suis genome project at Sanger Institute S.uberis - Streptococcus uberis genome project at Sanger Institute S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project Synechocystis strain PCC 6803 UniProtKB/Swiss-Prot entries, gene names and WWW servers TmDB - Thermotoga maritima genome db at JCVI-CMR TpDB - Treponema pallidum genome db at JCVI-CMR T.whipplei - Tropheryma whipplei genome project at Sanger Institute U.urealyticum - Ureaplasma urealyticum genome WWW site VcDB - Vibrio cholerae genome db at JCVI-CMR X.fastidiosa - Xylella fastidiosa genome project Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute
Archaea
List of complete archaeal proteomes in Swiss-Prot (HAMAP) UCSC Archeal Genome Browser A.pernix - Aeropyrum pernix K1 genome db AfDB - Archaeoglobus fulgidus genome db at JCVI-CMR Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project M.jannaschii UniProtKB/Swiss-Prot entries, gene names and WWW servers MjDB - Methanococcus jannaschii genome db at JCVI-CMR Pyrococcus abyssi genome and re-annotation db Pyrococcus sp. OT3 Sulfolobus solfataricus P2 genome project T.volcanium - Thermoplasma volcanium genome project
Viruses and phages
All the virology on the WWW - links to virology WWW servers by David M. Sander ICTVdB - Universal virus taxonomy db ViralZone - Portal to viral UniProtKB/Swiss-Prot entries Adenoviruses web site HCVDB - Hepatitis C virus db HIV - HIV and related species db HPV - Human papillomaviruses db Picornavirus - Picornavirus home page and access to db VirOligo- virus-specific oligonucleotides database PhageBase Phage Sequence Databank at Sdsu Center for Universal Microbial Sequencing Bacteriophage ecology group GOLD - Genomes On-line db DOGS - Database of genome sizes
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Human mutation databases/resources
HGMD - Human Gene Mutation db SVD - EBI Sequence variation db HGVbase HGVS - The Human Genome Variation Society GeneDis - Human genetic disease db The International HapMap Project dbSNP - Human single nucleotide polymorphism (SNP) db ALFRED - Allele Frequency Db SeattleSNPs - UW-FHCRC Variation Discovery Resource PicSNP - Catalog of non-synonymous SNP List of mutation databases from OMIM List of mutation databases from IMT (Finland) ADAbase - Human adenosine deaminase (ADA) mutation db Albinism Database Albumin Web site AR mutations - Human androgen receptor mutation db Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies BLMbase - Human BLM mutation db (Bloom syndrome) BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) CC_dbMD The Congenital Cataract Mutation Database CD3Ebase - Human CD3E mutation db CD3Gbase - Human CD3G mutation db CD40Lbase - Human CD40 ligand mutation db CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collagen mutation db Connexin-deafness - Human connexins mutation db CFTR mutation - Human cystic fibrosis mutation db (CFTR) KMbloodDB - Blood disease genes db KMbrainDB - Brain disease genes db KMcancerDB - Cancer disease genes db KMearDB - Ear disease genes db KMeyeDB - Eye disease genes db KMheartDB - Heart disease genes db KMmuscleDB - Muscle disease genes db KMsyndromeDB MaiDB (autoimmune) G6PD - Human G6PD deficiency resource G6PDdb - Human G6PD mutation db GNAS1 - Human GNAS1 mutation db HAMSTeRS - The Haemophilia A Mutation db and Factor VII Resource site Haemophilia B mutation db- Factor IX HbVar - Hemoglobin variants db Hereditary hearing loss homepage LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LHR - Human luteinizing hormone (LH) receptor mutation db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db OCRL1 - OCRL1 mutation db (Lowe Syndrome) OTCase - Human ornithine transcarbamylase (OTCase) website Cytochrome P450 alleles nomenclature IARC TP53 mutation db - International Agency for Research on Cancer Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH) mutation db PAX2 mutation - Human PAX2 mutation db PAX6 mutation - Human PAX6 mutation db Prion - Wikipedia Prion and prion disease RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated protein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases Alsod.org - ALS/SOD1 genetic mutations db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WRN - Human WRN mutation db (Warner disease) X-ALD mutation - Human ABCD1 mutation db
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Gene(s)/protein(s) specific databases/resources
Human ABC transporters ABCISSE - ABC systems : Information on Sequence Structure and Evolution ADAMTS - Apte lab ADAMTS and ADAMTSL resource Human albumin Web site Nomenclature and entries of allergens in UniProtKB/Swiss-Prot Allergen sequence db Allergome - A platform for allergen knowledge SDAP - Structural database of allergenic proteins Alginate genes - Pseudomomonas alginate production genes Entries of aminoacyl-tRNA synthetases in UniProtKB/Swiss-Prot AARSDB - Aminoacyl-tRNA synthetases db Androgen Receptor Gene Mutations Database AMSDb - Antimicrobial sequences db Antibody resource page - Links to antibody related Web resources AraC-XylS - A db on a family of helix-turn-helix transcription factors from bacteria Bcl-2 family database Blood group antigens in UniProtKB/Swiss-Prot BRENDA - Db of enzyme functional data EF-hand CaBP - EF-hand calcium-binding proteins data library CAZy - Carbohydrate-Active enZYmes Web site CBS domain - Cystathionine Beta Synthase domain Web page CD antigens entries and nomenclature in UniProtKB/Swiss-Prot Chaperonin - Information on GroEL and GroES chaperonins cpnDB - A Chaperonin Database CSDBase - Cold shock domain db COPE - Cytokines On-line Pathfinder Encyclopedia dbCFC - Cytokine family db DExH/D protein db DnaB helicase DPInteract - DNA-Proteins interactions db EMP - Enzymes and Metabolic Pathways db ENZYME - Enzymes nomenclature db Worthington enzyme manual EpoDB - Erythropoiesis gene expression db (Epo GED) ESTHER - Esterases and alpha/beta hydrolase enzymes Estrogen Receptor Resource Expansins web site Modules - Extracellular proteins modules (domains) FADPNR - FAD-dependent pyridine nucleotide oxidoreductases Flavodoxins FYVE finger domain Globin - Globin gene server Glucocorticoid Receptor Resource Nomenclature and entries of Glycosyl hydrolases in UniProtKB/Swiss-Prot 7TM - Entries of 7-transmembrane G-linked receptors in UniProtKB/Swiss-Prot GPCRDB - G protein-coupled receptor db (7TM) at EMBL GPCRs database GRR - Glucocorticoid receptor resource SSFA-GPHR - Glycoprotein Hormone Receptors database Arabidopsis Glycosyltransferases Family 1 GnRH - Gonadotropin-releasing hormones (GnRH) family Histone - Histones db HIVdb - HIV protease db HORDE - Human Olfactory Receptor Data Exploratorium Hox proteins - Nomenclature and entries of vertebrate homeotic Hox proteins in UniProtKB/Swiss-Prot IMGT - ImMunoGeneTics db [Mirror at EBI] InBase - Inteins db from the New England Biolabs Integrins - from Wikipedia Initiation factors - Entries of translation initiation factors in UniProtKB/Swiss-Prot LGIC - Ligand Gated Ion Channel subunit db Voltage-gated Ion Channels KEGG - Kyoto Encyclopedia of Genes and Genomes Klotho - Biochemical compounds declarative db LED - Lipase Engineering Database MDB - Metalloprotein Site Database and Browser EPIMHC - A curated database of MHC ligands Mitochondrial carriers pages from Nelson's lab Mutator - Transposases, Mutator family MutS - MutS family NPD - Nuclear Protein db NucleaRDB - Federated db on nuclear receptors P450 pages from Nelson's lab P450 - Directory of P450-containing systems Arabidopsis P450 Web site IARC p53 db - IARC db of somatic p53 mutations PDE - Phosphodiesterases Plant Peroxidases Classification and entries of peptidases in UniProtKB/Swiss-Prot MEROPS - Peptidase db PLACE - Plant cis-acting regulatory DNA elements db KinBase PKR - Protein Kinase Resource PatBase - P-type ATPase db PPAR - Peroxisome Proliferator-Activated Receptor resource Proteoglycans Phytochromes - Computer analysis of phytochrome sequences PUMA2 - Evolutionary Analysis of Metabolism Reactome - a curated knowledgebase of biological pathways RecA - RecA protein REBASE - Restriction enzymes and methylases db Classification and entries of restriction enzymes/methylases in UniProtKB/Swiss-Prot Familes and entries of ribosomal proteins in UniProtKB/Swiss-Prot RNase P - Ribonuclease P db SABIO Reaction Kinetics Database SPAD - Signaling pathway db SRPDB - Signal Recognition Particle db SNF2 - SNF2 family protein resource TRANSFAC - Transcription factors db TFII - Basal transcription factors TRANSPATH - Signal Transduction Browser TC-DB - Transport Classification System from Milton Saier VDR - Vitamin D Nuclear Receptor WD-repeat - WD-repeat proteins family Wnt homepage WormPep - C.elegans proteins db YTPdb - Yeast Transport Protein db Tox-Prot - The UniProtKN/Swiss-Prot Toxin Annotation Program ConoServer The Venom Composition - Information on conotoxins from a Web site on cone shells International venom and toxin db Scorpion - Scorpion toxin db Snake - Snake toxin db
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Post-translational modifications databases and resources
DSDBASE - Disulfide database (derived from 3D data) GlycoSuiteDB - Db of glycan structures LIPID MAPS - LIPID Metabolites And Pathways Strategy GlycateBase - Database of glycation data for epsilon amino groups of lysines O-GlycBase - O-glycosylated proteins db Phospho.ELM - Phosphorylation sites db Phosphorylation site db - Bacterial and archaeal phosphorylation sites resource PhosphoSite - Db of phosphorylation sites in human and mouse proteomes DOLOP Db of bacterial lipoproteins UbiProt - Db of ubiquitylated proteins RESID - Db of Amino Acid Modifications Delta Mass - Db of mass of Post-Translational Modifications
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Phylogenetics and taxonomy databases & resources
COG and KOG - Phylogenetic classification of proteins encoded in complete genomes eggNog - Automated construction and annotation of orthologous groups of genes EGO - Eukaryotic Gene Orthologs Ensembl Compara - Genome-wide species comparisons HOGENOM - Homologous Sequences in Complete Genomes Database HOVERGEN - Homologous Vetebrate Genes Database InParanoid - Eukaryotic ortholog groups KO - KEGG Orthology: Metazome - Phylogenomic analysis of metazoan gene families Optic - Orthologous and paralogous transcripts in clades OMA - Orthologs Matrix Project (OMA) OrthoDB Hierarchical catalog of eukaryotic orthologs OrthoMCL DB Ortholog grouping for protein sequences from multiple genomes PhylomeDB - Database for phylomes (collections of phylogenetic trees for all proteins encoded in a given genome) P-POD - Princeton Protein Orthology Database with an emphasis on providing information about disease-related genes Protein Clusters - NCBI collection of related protein sequences (clusters) PhyloFacts - Pre-calculated structural and phylogenomic analyses of protein families and domains TreeFam - Tree families database of phylogenetic trees of animal genes CluSTr - Automatic classification of UniProtKB proteins into groups of related proteins HomoloGene - Automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes ProtoNet - Classification of the proteins into hierarchical clusters NCBI Taxonomy Browser NEWT - UniProt Taxonomy Browser The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms TreeBASE - Relational db of phylogenetic information
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Gene expression databases and resources
4DXpress - a database for cross-species expression pattern comparisons ArrayExpress - MicroArray informatics at the EBI Bgee - Retrieve and compare gene expression patterns across species BioGPS - The Gene Portal Hub CleanEx - database of gene expression profiles ExpressDB - Yeast and E.coli RNA expression db GeneX - An open source Gene Expression database GEO - Gene Expression Omnibus GXD - MGI Gene Expression Database (mouse) RAD - RNA abundance db SMD - Stanford microarray db MILANO - Microarray Literature-based Annotation Genevestigator - a multi-organism, novel type of online meta-analysis tool for gene expression GEMLeR - Gene Expression Machine Learning Repository
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Patents databases
DPD - DNA Patent db USDA Agricultural Biotechnology Intellectual Property Esp@cenet - Patent information database from the European Patent Office (worldwide coverage) FindThatPatent FreePatentsOnline - access to millions of patents WikiPatents - the largest database of patents open for public comment on the internet Germany Patent database - with full-text and one-click patent search Japanese Patents and Inventions USPTO patent db - USA Patent and Trademark Office patent db
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References (bibliographic databases)
PubMed Medline server BioMedSearch - an enhanced version of the NIH PubMed/MedLine search AGRICOLA - AGRICultural OnLine Access; ref. db from NAL Article@INIST - Scientific and Technical Information Institute articles and monographs db Korean Journals Abstract db SeqAnalRef - Sequence analysis bibliographic references
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Dictionaries, protocols, courses, nomenclature, etc.
BioABACUS - Biotechnology ABbreviation and ACronym Uncovering Service Biology Reference BioTech's life science dictionary DCB - Dictionary of cell biology by Julian Dow DNA Microbiology Guide Online AAnP - IUPAC-IUBMB nomenclature for amino acids and peptides Amino acids 2 - Another information page on amino acids (from Berlin Free Univ.) Carbohydrates - IUPAC-IUBMB nomenclature for carbohydrates Codon Usage db Glossary of Biochemistry and Molecular Biology - by David M. Glick Primer on molecular genetics - from the US Department of Energy Ion Source - Mass spectrometry resource Sequence similarity searches primer - from Keith Robison / Harvard Pedestrian guide to analysing sequence databases - from Burkhard Rost and Reinard Schneider Weight matrices for sequence similarity scoring - from David Wheeler / MBCR Quick Guides - EMBnet Quick guides BioComputing Hypertext Coursebook - from VSNS BCD BioActivity - Protein sequence and structure analysis: a practical guide Cold Spring Harbor Protocols Abbreviations of chemical compounds UniProtKB/Swiss-Prot list of nomenclature related references for proteins GO - Gene Ontology Consortium WWW site HUGO nomenclature committee JCBN - IUPAC-IUB Joint commission on Biochemical Nomenclature (JCBN) Nobel Foundation Website The Nobel prize Internet Archive UniProt Taxonomy Browser NCBI Taxonomy LPSN - List of Prokaryotic Names with Standing in Nomenclature ISIS - International Species Information System Species 2000 - Project to provide in an electronic form the names and taxonomy of all known species
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Biological software and databases catalog servers
CLC Free Workbench - A desktop program including a number of algorithms for DNA, RNA, and protein analyses. Available for Linux, MacOS X and Windows CLC Protein Workbench - A desktop program including a number of advanced algorithms for protein sequence analysis. Available for Linux, MacOS X and Windows CodonCode Aligner - Sequence assembly and alignment LabLife - Lab tools for your lab research BioCatalogue ChemSynthesis - Chemical Database LIC Generator - A web-based software for Ligation Independent Cloning vector and primer design Genamix Software Seek
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Gateways (portals) to Life Science resources
Art's Biotechnology Resource Antibody Directory - A comprehensive portal for antibodies with a broad collection of research antibodies available world over Biofind - Biotechnology industry information, gossip and news Bioinformatik.de - Web directory for bioinformatics BioNetbook - Institut Pasteur gateway to biosites Bioplanet - The bioinformatics homepage BIOPPS - Science & Technology Biocluster de Mexico Bioexplorer.net BioSpectrum Asia Edition - News & Jobs Biotaq.com BioTech Enzyme Directory - An exclusive portal for Enzymes, Substrates, Inhibitors and Recombinant proteins. ExactAntigen.com - a curated database of antibody products Genomics Directory Biosyn Gizmo - bundle of databases (siRNA, protein, peptide antigen) and tools HAGR - The Human Aging Genomic Resources Ion Channel Media Group LabAction - Biology video sharing site Labome - Common Laboratory services Microbiologyprocedure.com - Providing information on Microbiology basics, techniques, procedures, methods, applications and diseases Molecular Biology Gateway from Horizon Press Molecular Biology Online Resources - lists of Molecular Biology departments, websites, journals, books and reviews, employment opportunities and events Molecular Station - Molecular Biology Protocols and Bioinformatics Network Science Peptide Guide PharmaOpportunities - Pharmaceutical Jobs from Pharmaopportunities Proteomics Research ReNaBI - French bioinformatics platforms network ResearchJOBS Scitable by Nature Education - A Collaborative Learning Space for Science Undergraduates SIPHS - Question & Answer System for Life Sciences Researchers StrainInfo.net - Navigating microbial space Swiss Life Sciences database The Peptide Resource Page - your complet guide to peptide research and suppliers The Genomics Center Ufumes Nigerian Bioscientist - online educational, informational & academic resources for bioscientists
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Biological journals and publishers
Resources linking to journals home pages
UniProtKB/Swiss-Prot journals list - Provides direct links to most biological journals home pages PubList.com - Internet Directory of Publications e-journals.org - Electronic journals directory Medical Journal Online - List of journals from the University of Texas Research Medical Library Journal index from Genamics.com Journal index from Horizon Scientific Press HUM-MOLGEN - Virtual library from HUM-MOLGEN Highwire Press links to top Science Journals Medline full text lists - List of journals in Medline with Web sites ISSN - International Standard Serial Number organization
Publishers
Allen Press, Inc. ACS - American Chemistry Society publications AP - Academic Press has joined the Elsevier Group Alaken - Alaken, Inc. ASM - American Society of Microbiology publications Annual Reviews Arnold Publishers BioMed Central - The Open Access Publisher Bio-IT World - Technology for the Life Sciences BioScientifica Ltd Birkhauser Verlag Basel Blackwell Publishing - has joined the Wiley Group BMJ Group - British Medical Journal publishing group Cell Press Churchill Livingstone - has joined the Elsevier Group COB - The Company of Biologists Ltd CRC Press Online CSHL Press - Cold Spring Harbor Laboratory Press CSIRO - CSIRO Publishing CUP - Cambridge University Press CJP - Carden Jennings Publishing Co. Ltd Elsevier Science & Technology publishing FASEB publications G+B - Gordon and Breach Publishing Group has joined the Taylor & Francis Group HighWire Press Horizon Scientific Press Humana Press, Inc. - has joined the Springer family Informaworld IOS Press IR - Inter-Research Science Publisher JAMA - The Journal of the American Medical Association publications JL - John Libbey Eurotext Karger AG Editrice Kurtis LW&W - Lippincott Williams and Wilkins Martin Dunitz Publishers - has joined Informa Healthcare Mary Ann Liebert, Inc Elsevier Masson Elsevier Mosby Blackwell Munksgaard IAPC NAUKA - NAUKA International Academic Publishing Company (Russia) NRC Research Press OUP - Oxford University Press Parthenon Publishing Group Pharmaceutical Press Portland Press Pulsus Group Inc. Rockfeller University Press Sage Science Press SGM - Society for General Microbiology publications SIR - SIR Publishing Slack, Inc. Springer T&F - Taylor & Francis Group Thieme University of Chicago Press Urban and Fischer Verlag - has joined the Elsevier Group VSP - VSP International Science Publishers VZN - Verlag der Zeitschrift fur Naturforschung W de G - Walter de Gruyter and Co. WBS - W.B. Saunders Co. has joined the Elsevier Group Wiley - John Wiley and Sons [Mirror in the U.K.] Wiley-VCH
Bioinformatics journals and newsletters
Bioinformatics Briefings in Bioinformatics ISB - In Silico Biology BioInformer - EBI's newsletter embnet.news - EMBnet's newsletter NCBI Newsletter PDB Quaterly Newsletter B6 - Bulletin d'information du Service d'Informatique Scientifique (Pasteur Institute / FR) GenomeWeb BioInform - Global Bioinformatics news service BITS - Bioinformatics Information Technology and Systems
Genomic newsletters
Human Genome Project Information FGN - Fungal Genetics Reports Rice Genome Newsletter Textpresso - WormBase Literature Search
Miscellaneous
IJC - Internet Journal of Chemistry Plant Gene Register
Biotechnology trade journals
BioCentury Biotech Industry Supplier Registry BioWorld Online Drug Discovery and Development GEN - Genetic Engineering & Biotechnology News
General science journals
Nature New Scientist La Recherche Science Scientific American The Scientist ScienceDaily Magazine Science News Online CNN Sci-Tech - CNN Science and Technology
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Some biological societies and organizations
APS - American Peptide Society ASCB - The American Society for Cell Biology ASHG - American Society of Human Genetics ATC-LGCC - American Type Culture Collection Biochemical Society BSA - Botanical Society of America CSBMCB - Canadian Society of Biochemistry and Molecular and Cell Biology EFBF - European Federation of Biophysics EGF - European Genetics Foundation EMBO - European Molecular Biology Organization ESEB - European Society for Evolutionary Biology ESHG - European Society of Human Genetics FAOBMB - Federation of Asian and Oceanian Biochemists and Molecular Biologists FASEB - Federation of American Societies for Experimental Biology FEBS - Federation of European Biochemistry Societies HUGO - HUman Genome Organization HUPO - HUman Proteome Organization IUBMB - International Union of Biochemistry and Molecular Biology IUPAC - International Union of Pure and Applied Chemistry MSA - Mycological Society of America PPI - Plasma Proteome Institute PRF - Protein Research Foundation SDB - Society for Developmental Biology SGM - Society for General Microbiology SICB - Society for Integrative and Comparative Biology DOI - Digital Object Identifier foundation BioJava Project - International association of developers of Java tools for bioinformatics Bioperl Project - International association of developers of Perl tools for bioinformatics Biopython Project - International association of developers of Python tools for bioinformatics ISCB - International Society for Computational Biology OMG LSR - Object Management Group Life Science Research task force
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Biocomputing servers homepages
Europe
EBI - European Bioinformatics Institute EMBnet - European Molecular Biology Network EMBL - EMBL Biocomputing unit SIB - Swiss Institute of Bioinformatics EMBnet CH - Switzerland EMBnet node ISREC - ISREC/SIB Computational Cancer Genomics group (Lausanne / Swizerland) CBRG - Computational Biochemistry Research Group (Zurich / Switzerland) ABIM - Atelier BioInformatique (Marseille / FR) B3E - Bioinformatique/Biostatistique/Biomathematique/Epidemiologie (Paris / FR) Genethon - Genethon (Evry / FR) GeneStream - Institut de Génétique Humaine (Montpellier / FR) GENOSCOPE - Centre National de Séquencage (Evry / FR) GenoStar - Consortium for the development of a bioinformatic platform IGS - Information Génétique et Structurale (Structural and Genetic Information Laboratory) (Marseille / FR) IMPBIO - Informatique, Mathématiques, Physique en Biologie moléculaire Pasteur - Institut Pasteur (Paris / FR) PBIL - Pole Bio-informatique Lyonnais (Lyon / FR) Sanger - Sanger Centre (Hinxton / U.K.) BMM - Biomolecular Modelling laboratory at ICRF (London / U.K.) BSM - Biomolecular Structure and Modelling group at UCL (London / U.K.) Manchester - Manchester University Bioinformatics unit (U.K.) RIO - Roslin Institute Online (U.K.) HUSAR - Biocomputing Service at DKFZ AG BIODV - Software Development for Molecular Biology at Helmholtz Zentrum (Germany) FLI - Genome Analysis in Complex Diseases, Ageing and Model Organisms (Germany) MDC:Bioinf - Department of Bionformatic of the Max Delbruck Center for Molecular Medicine (Germany) MIPS - Munich Information Centre for Protein Sequences (Germany) PZR - Bioinformatics at the Proteome Center Rostock (Germany) VSNS BCD - Virtual School of Natural Sciences Biocomputing Division from the University of Bielefeld (Germany) BEN - Belgium EMBnet node CBS - Center for Biological Sequence Analysis (Technical University of Denmark) CSC BioBox - CSC; Finland EMBnet node ABC - Agricultural Biotechnology Center (Budapest / Hungary) Telethon Italy CMBI - Center for Molecular and Biomolecular Bioinformatics; Netherland EMBnet node BIO - Biotechnology Centre of Oslo; Norway EMBnet node IBB - Institute of Biochemistry and Biophysics (Warsaw); Poland EMBnet node IGC - Bioinformatics and Computational Unit of the Instituto Gulbenkian de Ciencia; Portugal EMBnet Node Belozersky Institute - GeneBee Molecular Biology server (Moscow); Russia EMBnet node MGS - Molecular Biological Server (Novosibirsk / Russia) CNB - Centro Nacional de Biotecnologia; Spain EMBnet node BMC - BioMedical Centre at Uppsala; Sweden EMBnet node KISAC - Karolinska Institute (KI) Sequence Analysis Computer LCB - Linnaeus Centre for Bioinformatics SBC - Stockholm Bioinformatics Center
USA and Canada
NCBI - National Center for Biotechnology Information ABCC - Advanced Biomedical Computing Center at the NCI ACGT - Advanced Center for Genome Technology at the University of Oklahoma BCM HGC - Baylor College of Medicine Human Genome Center BDGP - Berkeley Drosophila Genome Project BioTech - Life Sciences Resources and Reference Tools Biotechnology - National Agricultural Library - Biotechnology BMERC - Biomolecular Engineering Research Center BROAD Institute CBIL - Computational Biology and Informatics Laboratory at the University of Pennsylvania CCB - Washington University Center for Computational Biology CUBIC - Columbia University Bioinformatics Center / RostLab JCVI - J. Craig Venter Institute JGI - Doe Joint Genome Institute NCGR - National Center for Genome Resources NIH - Computational Molecular Biology at NIH UCLA - UCLA Bioinformatics Institute Bioinformatics & Research Computing at Whitehead Institute CBR - Canadian Bioinformatics Resource (currently not working) CCB - Centre for Computational Biology at the Hospital for sick children
Asia
APBioNet - Asia-Pacific Bioinformatics network BIC-JNU - Bioinformatics Center of Jawaharlal Nehru University BIDD - Bioinformatics & Drug Design group (National University / Singapore) DIC - Bioinformatics Centre at the University of Pune Japanese GenomeNet NIG - National Institute of Genetics of Japan KDRI - Kazusa DNA Research Institute CBI - Peking Center of Bioinformatics; Chinese EMBnet node MICRO-NET - Microbial Information Network of China HKBIC - Hong Kong Bioinformatics Center BRIC - Biological Research Information Center (Korea) MGRC - Malaysian Genomics Resource Centre BIC - BioInformatics Center of the National University of Singapore
Australia
APBioNet - Asia-Pacific Bioinformatics network ANGIS - Australian National Genomic Information Service ANU - Australian National University Genomic Interactions group APAF - Australian Proteome Analysis Facility
Others
HUJI - Hebrew University of Jerusalem genomic and bioinformatics server Weizmann Bioinfo/BCU - Weizmann Institute of Science Bioinformatics and Biological Computing SANBI - South African BioInformatics Institute BDT - Base de Datos Tropical (Sao Paulo / Brazil) ICGEB - International Center for Genetic Engineering and Biotechnology (Trieste / Italy)
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Biotechnology and pharmaceutical companies
Pharmaceutical Research and Manufacturers of America membership list Bioportfolio - Gateways to biobusiness 1st BASE Singapore 5 Prime, Inc. Abcam - Supplier of antibodies, kits and reagents Actelion Addgene Affymetrix, Inc. AgricultureB2B.com - Biotechnology WWW Resources Airmid Pharmaceuticals - privately held pharmaceutical company based in California. ALEXIS Biochemicals - Now Enzo Life Sciences Amgen Amplicon Express AMSBIO - Innovative products for genomics, proteomics and immunology Antibodies online ARCA biopharma ARIAD Pharmaceuticals, Inc. Arpida Ltd AstraZeneca Pharmaceuticals Atheris Laboratories Aurora Fine Chemicals Ltd Basilea Bayer BD Biosciences - Becton, Dickinson and Co Biacore Life Sciences Bio Balance, Inc. Bio-Synthesis Inc Biogen Idec BioLaboratorio BioPur AG - Proteins - Enzymes - Reagents Bio-Rad Laboratories, Inc. Biosci Register - The Online Biotech Buyer's Guide BioSystematica - Gel Imagers & Gel Analysis BioTools BioVisioN GmbH BTC - BioSpecifics Technology Corp. Caprion Proteomics, Inc. Carbosynth - offering 2500 carbohydrates and nucleosides Celera Cellectis SA - Genome Engineering CST - Cell Signalling Technology CellZome Centocor Ortho Biotech, Inc. Ciphergen Biosystems, Inc. Clinical Data, Inc. CLL Pharma Clontech Laboratories, Inc. Cooper Pharma Ltd CSL Ltd CuraGen Corp. Cytos Biotechnology DATAbiotech deCODE Genetics, Inc. Destiny Pharma Ltd. DNAVision Do-Coop Technologies Ltd Drug Development Technology easyDNA - DNA testing company Eli Lilly Emerald Biosystems - products for crystallography Encysive Pharmaceuticals Entelechon GmbH Entelos, Inc. - predictive biosimulation EnviroLogix, Inc. - Test Kits Enzon Pharmaceuticals, Inc. Epidauros Biotechnologie AG - Solutions in Pharmacogenetics EraGen Biosciences - molecular assays for early detection of diseases EVOTEC AG Esbatech - Antibody fragment therapeutics Exelixis Inc. Exclusive Chemistry - design and synthesis of organic compounds Fermentas Fine Chemicals - Fine chemicals at Spectrum Chemicals. G Biosciences - Proteomic products Gelcompany GENEART - DNA engineering and processing Genencor International, Inc. Genentech, Inc. GeneON Genetics Institute GE Healthcare Genfit - early prevention and treatment of cardiometabolic and neurodegenerative diseases Genlantis - biological reagents and protein expression tools Genome Express, SA Genomic Solutions, Inc. GenScript (DNA Synthesis) - Gene/DNA Synthesis Supplier GenWay Biotech, Inc. Genzyme Co. Geron Co. GL Biochem (Shangai) Ltd Global Scientific - The Laboratory Supply Company GSK - GlaxoSmithKline Helix Biopharma Corp. HGS - Human Genome Sciences, Inc. HRI - Helix Research Institute, Inc. Hybrigenics SA HyTest - Cardiac markers, disease reagents, hormones and toxins, human proteins, neuroscience products. Illumina, Inc. Incyte Pharmaceuticals, Inc. Integrated Genomics, Inc. ISCO - International Stem Cell Corporation International Biosciences Invitrogen Johnson & Johnson Jova Solutions Keratech Diagnostics KuDOS Pharmaceuticals Ltd LAROVA GmbH Lee BioSolutions, Inc. Ligand Pharmaceuticals, Inc Merck Serono Migenix Mitsui Chemicals America, Inc. Millennium Pharmaceuticals, Inc. Millipore Co. Miltenyi MOLOGEN AG MP Biomedicals - (formerly ICN Biomedicals & Qbiogene) MP Sciences Myriad Genetics, Inc. NEB - New England Biolabs, Inc. NGI - National Genetics Institute Nonlinear Dynamics Ltd Novartis Novo Nordisk Novozymes Ocimum Biosolutions - BioIT, Microarrays and contract research services Open Biosystems - part of Thermo Fisher Scientific Opsona Therapeutics - drug development company specialising in the human immune system Organic Chemistry Portal Pfizer, Inc. Pharsight Corp. PrimerDesign Prionics AG Promega Corp. Proteome Factory (German version) Prozomix - Recombinant enzymes and proteins ProZyme, Inc. QIAGEN GmbH Quantum Pharmaceuticals - Drug Discovery and Computational Chemistry Software R&D Chemicals - Rare Chemicals Database Repligen Corp. Roche Bioscience sanofi-aventis Scientz - manufacturer of life science instruments Sequenom Industrial Genomics Shire Pharmaceuticals Group plc Sigma-Aldrich Sirius Analytical - automated pKa, logP/D and solubility measurement SKS Science Southern Lights Biomaterials Simplexity Health - was Cell Tech Syngenta The Genetics Company Thermo Scientific Toplab GmbH Transition Therapeutics Inc. Tyrian Diagnostics - ex-Proteome Systems Ltd Vernenium Vertex Pharmaceuticals WITA - Wittmann Institute of Technology and Analysis of Biomolecules GmbH Wyeth Pharmaceuticals - Health Care Professional Resources Worthington Biochemical Corp. Xenometrix AG Xerion Pharmaceuticals GmbH
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Bioinformatics companies
Accelrys, Inc ACD - Advanced Chemistry Development, Inc. Acrendo Medical Softwware - A.I.med software for medical record and management Algonomics Antibodies-online - The Marketplace for Research Antibodies ApoCom, Inc. Base4 Bioinformatics BIOBASE - Biological Databases Biodatabases.com - Biological databases division of Amita Corp. BioDiscovery, Inc. BioFocus DPI - A Galapagos Company Biomedical Computing, Inc. BIOSIS -at Thomson Reuters Science BIOSOFT BioTools, Inc. Caesar Software LLC CLC bio - Provider of bioinformatics consulting, software and hardware CodonCode Corporation - Software for DNA sequencing Cognia Corporation, Inc. Compugen [USA | Israel] Computational Genetics Laboratory - Multifactor Dimensionality Reduction (MDR) open source software LIMS By Core Informatics - software company focused on delivering fully customized web-based Laboratory Information Management Systems (LIMS) DNA* - DNAStar DYNACOM Co., Ltd. - Customized and packaged software solutions EMR Experts, Inc. - electronic medical records Era7 Bioinformatics Eurofins MediGenomix GmbH FQS - FQS Poland Sp. z.o.o. Genamics GeneBio - Geneva Bioinformatics SA Gene Codes Corp - software for DNA sequence analysis GeneData AG - computational solutions for drug discovery Gene Logic, Inc. - an Ocimum Biosolutions company GENETYX Corp. - website in japanese Genologics Genome Quest - web-based sequence data management solution Genomics Solutions, Inc GenoMining, SA - discovery and interpretation of biological data Geospiza, Inc - software systems for workflow management of genetic analysis Genotypic GNS - Gene Network Sciences Golden Helix - Whole Genome SNP, CNV, and ROH Analysis & Consultation Ingenuity Systems, Inc. - knowledge management for Life Sciences Janssen-genomics JustBio - BioInformatics and web-services for molecular biology scientists KineMatik Lambda-Plus Matrix Science Ltd Metaphorics, LLC Microrite, Inc Ocimum Biosolutions - Integrated genomics company Partek, Inc. - Pattern Analysis and Recognition Technologies PREMIER Biosoft International Progeny Software, LLC Proteome Consult - Consulting & Project Management for Protein Analysis & Proteomics Redasoft - software for molecular biology Rishi Biotech Bio-IT company offering bioinformatics solutions to the Pharma, Healthcare and Biotech industries Rosetta Biosoftware - Informatics solutions for life sciences research Scitech SGI - high-performance computing TIBCO Software, Inc. - Spotfire: solutions for life sciences Striking Devlopment, Inc. SBI - Structural Bioinformatics, Inc. Symyx Technologies, Inc Techcuriosity TimeLogic - biocomputing solutions Tripos Inc. - a Certara company VirtualChemistry WebGenetics
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Other links

Miscellaneous medical references sites
DrugWatch.com - information about medications and drugs currently or previously available European Organisation of Family Health Reseach FDA CDER - FDA Center for Drugs Evaluation and Research HON - The Health On the Net foundation server NLM - National Library of Medicine Hardin MD - Hardin meta directory of Internet health sources PhRMA - Pharmaceutical Research and Manufacturers of America WebMD - Guide to the Internet medicine Apheresis News Cell Therapy News ReutersHealth - Reuters Medical News Healthline - Health Search Engine and Medical Information HealthMash - Medical Knowledge Base and Semantic Search Engine Healthopedia - Your Health Encyclopedia Intute (ex- OMNI - Organising Medical Networked Information) Medical software advice MedicineNet, Inc - Medical Reference Site MedlinePlus - NLM list of resources for health questions Medweb Molecular Imaging by Diagnostic Imaging Online Cancer Guide - A comprehensive resource providing complete information on various types of cancers Orphanet - The portal of rare diseases and orphan drugs ORD - NIH Office of Rare Diseases Prous Science - Medical and drug information provider TOXNET - NLM Toxicology Data Network ToxSeek - Toxicology and Environmental Search and Clustering Engine Visible Human at EPFL - EPFL server for the images of the "Visible Human" NLM project ADInstruments - Data Acquisitions Systems for Life Science Claricode - Expert Medical Software Development OMNIMD - Certified Electronic Medical Records (EMR) and Practice Management product and services Sequel EMR - Electronic Medical Records software Biohealthmatics.com - career and job search networking site for biomedical informatics professionals
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Miscellaneous scientific references sites

BioMint - Mining the Biomedical Literature Biowww.net Periodic table of the elements Interactive periodic table of the elements CL!Psci Scientific Search Engine Vadlo - search engine specific to Life Sciences ePharmaExpo.com - The virtual trade show for the pharmaceutical industry IDB - Internet Directory for Botany myScience.ch - the Swiss Portal for Research and Innovation SciCentral - Gateway to the best science directories Science.org - a portal to promote and support the gain of knowledge Science News - Science-News.org Your Science and Technology News Headquarters TheScientificWorld - Portal to science resources Science Clarified ASCB Image & Video Library Library of Congress British Library Encyclopaedia Britannica and other resources EOL - Encyclopedia of Life A Web of on-line dictionaries - Links to many dictionaries in a variety of languages Roget's Thesaurus Merriam-Webster dictionary and thesaurus Dictionary of acronyms Gutenberg Project - Electronic full text version of classics World Science - Science News Website Wikipedia, The Science portal Database of Grants-in-Aid for Scientific Research in Japan [in Japanese] theScienceJobs.com Life Science - Jobs in Ireland Jumper 2.0- knowledgebase search engine platform

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Disclaimer

This list is not supposed to be complete, it will list servers that we find useful and up-to-date.

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Last modified 10/MAR/2010 by GGR